Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 27
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

22 CpGs in target; 19 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    51.8    199        0   13.4
Qui1     Qui    46.2    145        0   11.6
Qui2     Qui    52.7    110        0   10.4
Qui3     Qui    25.7    218        0   14.1
Qui4     Qui    25.4    185        0   10.1
Rio1     Rio     1.7    117        0   12.2
Rio2     Rio     1.9    104        0    8.4
Rio3     Rio     1.0     97        0    7.7
Rio4     Rio    11.6     95        0   10.2