Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 1
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    28.6     21        0   30.5
Qui1     Qui    33.3     15        0   29.5
Qui2     Qui    30.4     23        0   25.0
Qui3     Qui    28.6     21        0   35.0
Qui4     Qui     0.0      7        0   12.5
Rio1     Rio     5.6     18        0   20.0
Rio2     Rio     9.1     11        0   17.0
Rio3     Rio    15.4     13        0   15.5
Rio4     Rio     0.0     14        0   21.0