Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 5
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    33.3     12        0   20.5
Qui1     Qui    25.0      4        0   11.0
Qui2     Qui    20.0     10        0   14.5
Qui3     Qui    16.7     12        0   20.0
Qui4     Qui    28.6      7        0   13.0
Rio1     Rio     0.0     12        0   17.0
Rio2     Rio     0.0      9        0   12.0
Rio3     Rio     0.0      7        0   10.0
Rio4     Rio     0.0      9        0   14.0