Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 20
  seen in >= 2 oysters: 4
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

29 CpGs in target; 28 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    26.4    193        0   12.7
Qui1     Qui    55.1    158        0   10.1
Qui2     Qui    21.6    171        0    9.2
Qui3     Qui    24.5    249        0   13.6
Qui4     Qui    30.8    130        0    9.0
Rio1     Rio     3.0    231        0   10.8
Rio2     Rio     1.4    217        0   11.2
Rio3     Rio     1.3    149        1    7.6
Rio4     Rio     1.0    205        0   11.8