Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 64
  seen in >= 2 oysters: 22
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 3]
    58010868 C>T  Pum=  Qui=0.667  Rio=0.0
    58010880 C>T  Pum=  Qui=0.688  Rio=0.0
    58010985 C>T  Pum=  Qui=0.6  Rio=0.0

11 CpGs in target; 8 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    92.5     53        1    7.0
Qui1     Qui    73.0     63        2    6.9
Qui2     Qui    75.4     69        0    5.3
Qui3     Qui    72.7     44        2    7.9
Qui4     Qui    53.3     15        2    2.7
Rio1     Rio    90.1     71        0    8.7
Rio2     Rio    83.7     43        0    8.4
Rio3     Rio    91.8     61        0    6.7
Rio4     Rio    89.4     66        0    8.9