Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 27
  seen in >= 2 oysters: 6
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 5  [CpG-destroying: 2]
    55563016 G>A  Pum=  Qui=1.0  Rio=0.056
    55563070 G>A  Pum=1.0  Qui=1.0  Rio=0.045
    55563118 A>T  Pum=1.0  Qui=0.976  Rio=0.091
    55563154 T>C  Pum=0.75  Qui=0.767  Rio=0.043
    55563180 A>G  Pum=0.75  Qui=0.75  Rio=0.0

30 CpGs in target; 3 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    44.1     34        0    2.9
Qui1     Qui    46.4     69        0    4.9
Qui2     Qui    40.7     54        0    3.4
Qui3     Qui    61.5     65        0    4.3
Qui4     Qui    25.0     56        0    3.5
Rio1     Rio     1.2    164        0    6.5
Rio2     Rio     2.4     85        0    3.5
Rio3     Rio     0.0     71        0    4.4
Rio4     Rio     0.7    142        0    6.6