Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 6
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 4  [CpG-destroying: 1]
    55562693 T>G  Pum=  Qui=0.895  Rio=0.0
    55562716 G>A  Pum=  Qui=1.0  Rio=0.0
    55562740 T>C  Pum=  Qui=0.913  Rio=0.138
    55562761 T>C  Pum=  Qui=0.625  Rio=0.114

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum              0        0    1.0
Qui1     Qui   100.0      4        0    7.0
Qui2     Qui    50.0      2        0    6.0
Qui3     Qui    50.0      2        0    5.0
Qui4     Qui   100.0      2        0    4.0
Rio1     Rio     0.0      1        0    6.0
Rio2     Rio     0.0      2        0    4.0
Rio3     Rio     0.0      2        0   10.0
Rio4     Rio     0.0      5        0    9.0