Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 5
  seen in >= 2 oysters: 5
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 5  [CpG-destroying: 2]
    55562099 G>A  Pum=0.833  Qui=1.0  Rio=0.176
    55562117 T>A  Pum=1.0  Qui=1.0  Rio=0.167
    55562137 T>G  Pum=0.571  Qui=0.757  Rio=0.083
    55562163 A>G  Pum=0.556  Qui=0.8  Rio=0.107
    55562164 G>A  Pum=1.0  Qui=1.0  Rio=0.158

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    80.0      5        0    7.0
Qui1     Qui   100.0      6        0    9.0
Qui2     Qui    70.0     10        0   12.0
Qui3     Qui    71.4      7        0    8.0
Qui4     Qui    80.0      5        0    9.0
Rio1     Rio     0.0      2        0    3.0
Rio2     Rio     0.0      4        0    7.0
Rio3     Rio     0.0      6        0    7.0
Rio4     Rio     0.0      5        0    7.5