pos ref alt in_target n_oysters_with_alt alt_freq_Pum alt_freq_Qui alt_freq_Rio pop_differentiated cpg_destroying Pum1 Qui1 Qui2 Qui3 Qui4 Rio1 Rio2 Rio3 Rio4 55562066 C T True 1 0.909 0.125 True True 1.00/2 0.75/4 1.00/2 1.00/3 0.00/2 0.00/3 0.50/2 0.00/1 55562072 C A True 1 1.0 0.125 True False 1.00/2 1.00/4 1.00/2 1.00/3 0.00/2 0.00/3 0.50/2 0.00/1 55562099 G A True 6 0.833 1.0 0.176 True True 0.83/6 1.00/5 1.00/8 1.00/6 1.00/4 0.00/2 0.00/4 0.43/7 0.00/4 55562117 T A True 6 1.0 1.0 0.167 True False 1.00/7 1.00/8 1.00/10 1.00/9 1.00/8 0.00/3 0.00/7 0.50/8 0.00/6 55562137 T G True 6 0.571 0.757 0.083 True False 0.57/7 0.67/9 0.83/12 0.88/8 0.62/8 0.00/2 0.00/7 0.29/7 0.00/8 55562163 A G True 6 0.556 0.8 0.107 True False 0.56/9 0.71/7 0.82/11 1.00/6 0.67/6 0.00/3 0.00/8 0.38/8 0.00/9 55562164 G A True 6 1.0 1.0 0.158 True True 1.00/5 1.00/5 1.00/8 1.00/6 1.00/4 0.00/1 0.00/5 0.43/7 0.00/6 55562187 G A True 5 1.0 1.0 0.2 True True 1.00/5 1.00/4 1.00/8 1.00/5 1.00/3 0.00/2 0.00/2 0.50/6 0.00/5 55562226 G T True 1 0.0 0.0 0.067 False False 0.00/4 0.00/6 0.00/7 0.00/7 0.00/3 0.00/3 0.00/2 0.25/4 0.00/6 55562228 G C True 1 0.0 0.0 0.067 False False 0.00/4 0.00/6 0.00/7 0.00/6 0.00/3 0.00/3 0.00/2 0.25/4 0.00/6 55562229 G C True 1 0.0 0.0 0.067 False False 0.00/4 0.00/6 0.00/6 0.00/6 0.00/3 0.00/3 0.00/2 0.25/4 0.00/6 55562235 C T True 1 1.0 1.0 0.0 False True 1.00/4 1.00/3 1.00/2 0.00/1 0.00/1 0.00/1 0.00/2 55562244 G A True 4 1.0 0.111 True True 1.00/2 1.00/6 1.00/8 1.00/5 1.00/2 0.00/3 0.00/3 0.50/4 0.00/8 55562245 C A True 0 1.0 0.0 False False 1.00/3 1.00/3 1.00/2 0.00/2 0.00/2 0.00/1 0.00/2 55562255 T G True 4 0.333 0.762 0.077 True False 0.33/6 0.62/8 1.00/7 1.00/3 0.33/3 0.00/5 0.00/5 0.40/5 0.00/11 55562314 A G True 4 0.571 0.739 0.0 True False 0.57/7 0.67/6 0.78/9 0.83/6 0.50/2 0.00/5 0.00/5 0.00/2 0.00/12 55562325 A G True 4 0.625 0.7 0.0 True False 0.62/8 0.67/6 0.67/6 0.83/6 0.50/2 0.00/5 0.00/4 0.00/2 0.00/12 55562329 A G True 4 0.625 0.75 0.0 True False 0.62/8 0.67/6 0.71/7 0.83/6 1.00/1 0.00/6 0.00/6 0.00/2 0.00/12 55562333 A T True 4 0.625 0.667 0.0 True False 0.62/8 0.50/6 0.62/8 0.83/6 1.00/1 0.00/6 0.00/7 0.00/2 0.00/12 55562350 T C True 1 0.0 0.0 0.04 False False 0.00/8 0.00/7 0.00/8 0.00/5 0.00/1 0.25/4 0.00/6 0.00/3 0.00/12 55562352 T C True 1 0.0 0.0 0.08 False False 0.00/8 0.00/7 0.00/8 0.00/5 0.00/1 0.25/4 0.00/6 0.00/3 0.08/12 55562353 A T True 1 0.0 0.0 0.043 False False 0.00/8 0.00/7 0.00/8 0.00/5 0.00/1 0.25/4 0.00/6 0.00/3 0.00/10 55562363 G C True 1 0.0 0.071 0.0 False False 0.00/5 0.00/4 0.00/5 0.25/4 0.00/1 0.00/2 0.00/4 0.00/1 0.00/8 55562371 G T True 3 1.0 1.0 0.0 True False 1.00/5 1.00/4 1.00/5 1.00/3 1.00/1 0.00/2 0.00/3 0.00/1 0.00/7 55562383 C T True 0 1.0 0.125 False True 1.00/3 1.00/2 1.00/3 1.00/1 0.00/2 0.00/1 0.50/2 0.00/3 55562407 C A True 1 0.0 0.1 False False 0.00/1 0.00/3 0.00/1 0.00/3 0.00/1 0.00/2 0.25/4 55562408 T C True 1 0.0 0.0 0.056 False False 0.00/6 0.00/4 0.00/7 0.00/2 0.00/1 0.00/5 0.25/4 0.00/2 0.00/7 55562409 T C True 1 0.167 0.0 0.056 False False 0.17/6 0.00/4 0.00/7 0.00/2 0.00/1 0.00/5 0.25/4 0.00/2 0.00/7 55562412 A T True 2 1.0 1.0 0.059 True False 1.00/4 1.00/3 1.00/6 1.00/2 1.00/1 0.00/5 0.00/3 0.50/2 0.00/7 55562433 A G True 1 0.154 0.0 False False 0.33/3 0.00/3 0.00/5 0.50/4 0.00/1 0.00/5 0.00/3 0.00/1 0.00/7 55562444 T C True 1 0.182 0.062 False False 1.00/2 0.00/3 0.00/3 0.50/4 0.00/1 0.00/6 0.00/3 1.00/1 0.00/6 55562476 A G True 1 0.4 0.0 False False 0.00/2 0.50/2 0.67/3 0.25/4 0.00/1 0.00/5 0.00/3 0.00/7 55562478 C G True 0 0.25 0.0 False False 0.00/2 0.00/2 0.50/2 0.00/3 0.00/2 0.00/4 55562480 C A True 0 0.25 0.0 False False 0.00/1 0.00/2 0.50/2 0.00/3 0.00/2 0.00/4 55562584 C T True 0 1.0 0.0 False True 1.00/1 1.00/1 1.00/1 1.00/2 1.00/2 0.00/4 0.00/3 0.00/1 0.00/4 55562673 T C True 1 0.0 0.045 False False 0.00/1 0.00/6 0.00/6 0.00/4 0.00/1 0.00/7 0.25/4 0.00/4 0.00/7 55562688 C G True 1 0.091 0.0 False False 0.00/1 0.25/4 0.00/4 0.00/2 0.00/1 0.00/3 0.00/1 0.00/4 0.00/4 55562693 T G True 3 0.895 0.0 True False 0.00/1 1.00/7 0.67/6 1.00/4 1.00/2 0.00/5 0.00/3 0.00/5 0.00/8 55562716 G A True 1 1.0 0.0 True True 1.00/4 1.00/2 1.00/2 1.00/2 0.00/1 0.00/2 0.00/1 0.00/5 55562740 T C True 5 0.913 0.138 True False 1.00/1 1.00/8 0.83/6 0.80/5 1.00/4 0.00/5 0.00/4 0.36/11 0.00/9 55562751 C A True 1 0.0 0.042 False False 0.00/1 0.00/5 0.00/4 0.00/3 0.00/2 0.00/5 0.25/4 0.00/9 0.00/6 55562761 T C True 5 0.625 0.114 True False 1.00/1 0.56/9 0.71/7 0.75/4 0.50/4 0.00/6 0.00/5 0.36/11 0.00/13 55562802 A G True 3 0.348 0.029 False False 0.00/2 0.45/11 0.25/4 0.00/3 0.40/5 0.00/5 0.00/7 0.12/8 0.00/14 55562816 G A True 1 1.0 0.1 False True 1.00/4 1.00/1 1.00/1 1.00/1 0.00/1 0.00/1 0.50/2 0.00/6 55562821 C G True 1 0.071 0.0 False False 0.00/2 0.00/5 0.25/4 0.00/3 0.00/2 0.00/5 0.00/5 0.00/5 0.00/7 55562824 C G True 1 0.071 0.0 False False 0.00/2 0.00/5 0.25/4 0.00/3 0.00/2 0.00/5 0.00/6 0.00/5 0.00/8 55562868 G A True 1 0.077 0.0 False True 0.00/3 0.25/4 0.00/3 0.00/3 0.00/6 0.00/3 0.00/2 0.00/2 55562920 A G True 4 0.25 0.327 0.0 False False 0.25/4 0.12/17 0.46/13 0.27/11 0.62/8 0.00/11 0.00/7 0.00/6 0.00/9 55562921 C T True 4 1.0 0.143 True True 1.00/3 1.00/14 1.00/7 1.00/7 1.00/3 0.00/5 0.00/5 0.60/5 0.00/6 55562938 C T True 3 1.0 0.136 True True 1.00/3 1.00/15 1.00/8 1.00/6 1.00/3 0.00/6 0.00/7 1.00/3 0.00/6 55562951 C A True 3 1.0 0.15 True False 1.00/3 1.00/16 1.00/6 1.00/6 1.00/3 0.00/6 0.00/6 1.00/3 0.00/5