Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 2
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 1]
    55289221 C>T  Pum=1.0  Qui=1.0  Rio=0.158
    55289268 T>C  Pum=0.889  Qui=0.885  Rio=0.128

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      1        1    9.0
Qui1     Qui     0.0      1        1    7.0
Qui2     Qui     0.0      1        1    8.0
Qui3     Qui              0        1   11.5
Qui4     Qui              0        1    5.5
Rio1     Rio              0        1   12.0
Rio2     Rio   100.0      2        0   10.5
Rio3     Rio     0.0      1        0   11.5
Rio4     Rio    66.7      3        0   11.0