Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 20
  seen in >= 2 oysters: 8
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 7  [CpG-destroying: 1]
    55267022 G>T  Pum=  Qui=1.0  Rio=0.5
    55267413 A>G  Pum=0.857  Qui=0.96  Rio=0.0
    55267453 G>T  Pum=1.0  Qui=1.0  Rio=0.095
    55267495 A>T  Pum=1.0  Qui=0.909  Rio=0.143
    55267589 G>A  Pum=1.0  Qui=0.941  Rio=0.167
    55267897 G>T  Pum=1.0  Qui=1.0  Rio=0.182
    55267904 T>C  Pum=0.8  Qui=0.667  Rio=0.0

26 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    13.8    123        0    5.6
Qui1     Qui    44.3    106        0    5.9
Qui2     Qui    64.9     97        0    4.5
Qui3     Qui    25.0    116        0    5.1
Qui4     Qui    36.1     97        0    4.3
Rio1     Rio     3.0    134        0    5.8
Rio2     Rio     1.8    109        0    5.0
Rio3     Rio     0.0     89        0    4.4
Rio4     Rio     0.0    116        0    6.1