Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 5
  seen in >= 2 oysters: 4
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    55222789 C>T  Pum=0.444  Qui=0.944  Rio=0.405

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    33.3     12        1   21.0
Qui1     Qui     0.0     12        1   15.0
Qui2     Qui     0.0      6        1   17.0
Qui3     Qui     0.0     11        1   26.0
Qui4     Qui     0.0      5        1   12.0
Rio1     Rio    20.0     15        1   31.5
Rio2     Rio    50.0      6        1   14.0
Rio3     Rio    37.5      8        1   17.0
Rio4     Rio    54.5     11        0   19.0