Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 5
  seen in >= 2 oysters: 4
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    55222789 C>T  Pum=0.444  Qui=0.944  Rio=0.405

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    66.7     12        0   20.0
Qui1     Qui    11.1      9        0   11.0
Qui2     Qui    50.0      4        1   14.0
Qui3     Qui    22.2      9        1   23.0
Qui4     Qui     0.0      4        1   12.0
Rio1     Rio    66.7     12        1   27.0
Rio2     Rio    40.0      5        0   12.5
Rio3     Rio    25.0      4        1   13.0
Rio4     Rio    71.4      7        0   17.0