Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 32
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    55157528 C>A  Pum=  Qui=1.0  Rio=0.3

17 CpGs in target; 2 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    78.3     60        0    5.7
Qui1     Qui    19.5     82        0    7.5
Qui2     Qui    37.3     83        0    6.2
Qui3     Qui    40.0     65        0    6.2
Qui4     Qui    42.2     64        1    5.7
Rio1     Rio    65.4    107        0    9.1
Rio2     Rio    76.8     99        0    6.5
Rio3     Rio    53.8     39        0    4.1
Rio4     Rio    68.2     66        0    4.8