Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 2
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    55047189 C>T  Pum=1.0  Qui=0.0  Rio=0.757

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      2        1    8.0
Qui1     Qui   100.0      5        0   11.5
Qui2     Qui   100.0      4        0   14.5
Qui3     Qui   100.0      4        0   18.0
Qui4     Qui   100.0      2        0   12.0
Rio1     Rio   100.0      2        1   13.5
Rio2     Rio     0.0      2        1   15.5
Rio3     Rio    20.0      5        1   12.0
Rio4     Rio     0.0      4        1    9.5