Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 16
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

28 CpGs in target; 3 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    78.3     23        1    4.5
Qui1     Qui     0.0     30        0    3.2
Qui2     Qui     0.0     17        1    4.2
Qui3     Qui              0        0    2.0
Qui4     Qui     0.0     21        0    3.8
Rio1     Rio    59.6     47        0    6.0
Rio2     Rio    87.1     31        0    4.0
Rio3     Rio    40.9     22        0    3.1
Rio4     Rio    60.9     23        0    4.8