Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 15
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    54985407 T>C  Pum=1.0  Qui=0.929  Rio=0.378

12 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      4        0    6.8
Qui1     Qui              0        0    6.5
Qui2     Qui     0.0      3        0   11.0
Qui3     Qui              0        0    9.6
Qui4     Qui              0        0    9.3
Rio1     Rio              0        0    7.2
Rio2     Rio    50.0      2        0    8.4
Rio3     Rio              0        0    8.0
Rio4     Rio              0        0   10.5