Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 4
  seen in >= 2 oysters: 4
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 2]
    54888000 C>T  Pum=0.0  Qui=1.0  Rio=0.154
    54888040 C>T  Pum=  Qui=1.0  Rio=0.154
    54888081 C>A  Pum=  Qui=1.0  Rio=0.182

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    85.7      7        0   10.5
Qui1     Qui     0.0      2        1    6.0
Qui2     Qui     0.0      2        1    6.0
Qui3     Qui     0.0     14        1   19.5
Qui4     Qui     0.0      8        1   12.0
Rio1     Rio    36.4     11        0   12.5
Rio2     Rio   100.0      4        0   12.5
Rio3     Rio    66.7      6        0    7.0
Rio4     Rio    66.7      6        0    7.0