Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 5
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 1]
    54874119 G>A  Pum=  Qui=1.0  Rio=0.381
    54874143 G>T  Pum=  Qui=1.0  Rio=0.4
    54874163 A>G  Pum=  Qui=0.97  Rio=0.353

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      3        0    3.0
Qui1     Qui     0.0      5        0   12.5
Qui2     Qui     0.0      3        0    5.0
Qui3     Qui     0.0      6        0   13.0
Qui4     Qui     0.0      3        0    6.0
Rio1     Rio    50.0      2        0    3.0
Rio2     Rio   100.0      7        0   12.0
Rio3     Rio    50.0      6        0    6.0
Rio4     Rio    16.7      6        0   12.0