Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 10
  seen in >= 2 oysters: 5
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 4  [CpG-destroying: 2]
    54865535 G>A  Pum=  Qui=1.0  Rio=0.318
    54865537 C>T  Pum=0.0  Qui=1.0  Rio=0.235
    54865577 A>T  Pum=0.0  Qui=0.929  Rio=0.357
    54865578 T>A  Pum=0.0  Qui=0.963  Rio=0.357

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    66.7      3        0    7.0
Qui1     Qui     0.0      4        0    6.0
Qui2     Qui     0.0      7        0    6.5
Qui3     Qui     0.0      4        1   10.0
Qui4     Qui     0.0      5        0    7.0
Rio1     Rio    66.7      9        1   16.0
Rio2     Rio   100.0      5        0   10.0
Rio3     Rio     0.0      2        1    5.0
Rio4     Rio    66.7      6        0    8.0