Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 6
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 2]
    54864734 G>A  Pum=  Qui=1.0  Rio=0.111
    54864767 C>T  Pum=0.0  Qui=0.95  Rio=0.083
    54864802 T>A  Pum=0.143  Qui=1.0  Rio=0.333

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    50.0      2        0    9.0
Qui1     Qui     0.0      2        1    5.0
Qui2     Qui              0        1    6.0
Qui3     Qui     0.0      4        1   10.5
Qui4     Qui     0.0      4        1    8.0
Rio1     Rio    66.7      3        0   13.0
Rio2     Rio   100.0      1        0    5.0
Rio3     Rio   100.0      1        0    4.0
Rio4     Rio     0.0      1        0    8.5