Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 7
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    54864495 C>T  Pum=0.0  Qui=1.0  Rio=0.258

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      3        0   11.0
Qui1     Qui     0.0      1        0    3.0
Qui2     Qui     0.0      1        1    6.0
Qui3     Qui     0.0      2        1    6.0
Qui4     Qui     0.0      4        1    8.0
Rio1     Rio   100.0      2        1   14.0
Rio2     Rio   100.0      4        0    8.0
Rio3     Rio              0        1    4.0
Rio4     Rio    50.0      4        1   14.0