Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 7
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

9 CpGs in target; 9 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    92.7     55        0    4.1
Qui1     Qui    23.1     65        0    5.2
Qui2     Qui    43.5     23        0    3.7
Qui3     Qui    40.8     49        0    4.0
Qui4     Qui    38.1     21        0    2.0
Rio1     Rio    77.1     35        0    4.2
Rio2     Rio    76.3     38        0    3.3
Rio3     Rio    79.5     44        0    3.9
Rio4     Rio    63.6     44        0    4.4