Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 34
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

44 CpGs in target; 16 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     3.1     64        0    2.2
Qui1     Qui    14.4    125        0    4.1
Qui2     Qui     0.0     84        0    1.3
Qui3     Qui    18.1    105        1    3.7
Qui4     Qui     2.6    115        1    4.7
Rio1     Rio    38.5    109        0    5.0
Rio2     Rio     5.2     77        0    2.8
Rio3     Rio    43.1    102        0    2.6
Rio4     Rio    22.2    135        0    4.7