Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 9
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

7 CpGs in target; 7 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    45.5     33        0    8.7
Qui1     Qui    71.4     35        0    7.1
Qui2     Qui    73.7     19        0   10.0
Qui3     Qui    76.5     51        0   12.1
Qui4     Qui    52.6     19        0    6.5
Rio1     Rio    36.4     33        0    9.7
Rio2     Rio    27.3     33        0    8.5
Rio3     Rio    37.0     27        1    9.0
Rio4     Rio    56.0     25        0    8.5