Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 4
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    5034849 G>A  Pum=0.0  Qui=0.393  Rio=1.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      6        0    6.0
Qui1     Qui    66.7      9        0   11.0
Qui2     Qui    50.0      6        0    9.0
Qui3     Qui    33.3      6        0   12.0
Qui4     Qui    71.4      7        0    7.0
Rio1     Rio     0.0     12        0   15.0
Rio2     Rio     0.0      8        0    9.0
Rio3     Rio     0.0      6        0   10.0
Rio4     Rio    11.1      9        0   12.5