Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 6
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    5028351 C>A  Pum=0.0  Qui=0.312  Rio=0.968

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    75.0      4        0   11.0
Qui1     Qui    33.3      3        0    9.0
Qui2     Qui    50.0      4        0   14.0
Qui3     Qui    42.9      7        0   11.5
Qui4     Qui              0        0    9.0
Rio1     Rio     0.0      5        0   13.0
Rio2     Rio    20.0      5        0   12.0
Rio3     Rio     0.0      3        0   11.0
Rio4     Rio     0.0      2        0    8.0