Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 43
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

26 CpGs in target; 2 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     12        0    2.0
Qui1     Qui    56.7     30        0    5.6
Qui2     Qui    53.0     66        0    7.7
Qui3     Qui    51.3     78        0    8.8
Qui4     Qui     0.0     21        0    4.2
Rio1     Rio     0.0     34        0    6.0
Rio2     Rio     0.0     42        0    5.9
Rio3     Rio     0.0     27        0    4.4
Rio4     Rio     3.2     31        0    5.7