Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 39
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

26 CpGs in target; 4 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     32        0    3.0
Qui1     Qui    41.2     51        0    5.5
Qui2     Qui    58.1     43        0    5.9
Qui3     Qui    90.6     32        1    6.2
Qui4     Qui     0.0     28        0    4.8
Rio1     Rio     2.1     47        0    7.8
Rio2     Rio    10.5     19        0    4.5
Rio3     Rio     0.0     11        0    5.3
Rio4     Rio     9.5     21        0    8.0