Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 29
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

17 CpGs in target; 10 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     32        0    4.9
Qui1     Qui    42.6     47        0    6.7
Qui2     Qui    77.9     68        0    9.7
Qui3     Qui    43.5     85        0    9.0
Qui4     Qui     0.0     28        0    4.0
Rio1     Rio     0.0     48        0    7.1
Rio2     Rio     0.0     60        0    7.0
Rio3     Rio     7.7     26        0    6.6
Rio4     Rio     0.0     56        0    7.2