Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 21
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

8 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    75.0     16        0    7.9
Qui1     Qui    59.1     22        0    7.3
Qui2     Qui    42.9      7        0    7.9
Qui3     Qui    40.0      5        0    9.0
Qui4     Qui    55.6     18        0    8.5
Rio1     Rio    62.5      8        0   10.0
Rio2     Rio    69.0     29        0   10.7
Rio3     Rio    75.0      4        0    3.5
Rio4     Rio    78.9     19        0   12.1