Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 41
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

32 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    27.3     99        0    5.3
Qui1     Qui     0.0     65        2    3.8
Qui2     Qui    15.7     83        0    3.9
Qui3     Qui     1.4     70        0    2.8
Qui4     Qui     7.8     90        0    4.0
Rio1     Rio    50.0    150        0    8.5
Rio2     Rio    13.8     87        0    4.7
Rio3     Rio    43.8    128        1    6.9
Rio4     Rio    58.6     87        0    5.2