Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 49
  seen in >= 2 oysters: 9
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 5  [CpG-destroying: 3]
    29878205 G>A  Pum=  Qui=1.0  Rio=0.435
    29878211 G>A  Pum=  Qui=1.0  Rio=0.417
    29878212 G>A  Pum=  Qui=1.0  Rio=0.417
    29878340 A>G  Pum=1.0  Qui=1.0  Rio=0.448
    29878611 A>G  Pum=  Qui=0.625  Rio=0.071

31 CpGs in target; 4 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    73.4     64        2    4.4
Qui1     Qui    64.7     51        0    4.0
Qui2     Qui    70.7     82        0    5.7
Qui3     Qui    56.1     41        0    4.1
Qui4     Qui    68.0     97        0    5.4
Rio1     Rio    86.4    110        0    5.9
Rio2     Rio    93.9    165        1    8.5
Rio3     Rio    92.5     53        0    4.7
Rio4     Rio    72.2     97        0    5.7