Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 23
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

33 CpGs in target; 18 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    87.6    113        0    7.0
Qui1     Qui    57.5    113        0    7.3
Qui2     Qui    44.6    112        0    6.9
Qui3     Qui    32.3    161        0    8.6
Qui4     Qui    77.0     87        0    5.7
Rio1     Rio    91.4     93        0    6.1
Rio2     Rio    85.9     64        0    4.1
Rio3     Rio    91.9     74        0    5.2
Rio4     Rio    68.5     89        0    8.4