Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 1
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    87.0     23        0   38.5
Qui1     Qui    63.6     22        0   33.0
Qui2     Qui    73.3     15        0   24.0
Qui3     Qui    88.9      9        0   18.0
Qui4     Qui    76.9     13        0   24.5
Rio1     Rio    27.8     36        0   52.5
Rio2     Rio    16.7      6        0   15.0
Rio3     Rio    54.8     31        0   46.0
Rio4     Rio    17.6     17        0   29.5