Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 1
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    88.0     25        0   43.0
Qui1     Qui    66.7     27        0   38.5
Qui2     Qui    83.3     18        0   26.5
Qui3     Qui    62.5      8        0   18.5
Qui4     Qui    73.3     15        0   27.0
Rio1     Rio    24.4     41        0   58.0
Rio2     Rio    14.3      7        0   15.5
Rio3     Rio    52.9     34        0   48.5
Rio4     Rio    17.6     17        0   30.0