Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 5
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 2]
    22950025 C>T  Pum=0.0  Qui=0.5  Rio=0.0
    22950034 T>C  Pum=0.0  Qui=0.581  Rio=0.045
    22950061 G>A  Pum=0.0  Qui=0.593  Rio=0.026

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    75.0      4        0    9.0
Qui1     Qui    40.0      5        1   10.0
Qui2     Qui    44.4      9        0    9.0
Qui3     Qui    80.0      5        0    7.5
Qui4     Qui    14.3      7        1   10.0
Rio1     Rio   100.0      6        0    8.5
Rio2     Rio   100.0      8        0   10.0
Rio3     Rio   100.0      9        0   11.0
Rio4     Rio   100.0     13        0   14.0