Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 27
  seen in >= 2 oysters: 4
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 0]
    22932343 A>T  Pum=0.0  Qui=0.707  Rio=0.0
    22932499 A>T  Pum=0.0  Qui=0.531  Rio=0.0
    22932740 T>A  Pum=0.0  Qui=0.531  Rio=0.024

10 CpGs in target; 10 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    81.8     55        0   10.6
Qui1     Qui    53.7     41        0    7.8
Qui2     Qui    70.7     41        0    8.2
Qui3     Qui    74.0     50        0    9.2
Qui4     Qui    72.0     25        1    6.7
Rio1     Rio    88.7     71        0   10.7
Rio2     Rio    88.9     36        0    8.0
Rio3     Rio    78.9     19        0    7.3
Rio4     Rio    86.6     67        0    8.8