Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 54
  seen in >= 2 oysters: 8
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 6  [CpG-destroying: 1]
    22903177 C>T  Pum=0.0  Qui=0.643  Rio=0.0
    22903409 C>A  Pum=  Qui=0.5  Rio=0.0
    22903410 C>A  Pum=  Qui=0.5  Rio=0.0
    22903851 T>A  Pum=  Qui=0.737  Rio=0.0
    22903872 T>G  Pum=  Qui=0.545  Rio=0.0
    22903914 T>A  Pum=0.0  Qui=0.692  Rio=0.0

27 CpGs in target; 3 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     2.2     45        0    6.9
Qui1     Qui    52.1     48        1    4.7
Qui2     Qui    64.1     39        1    5.0
Qui3     Qui    64.1     39        1    6.8
Qui4     Qui    34.7     49        0    4.2
Rio1     Rio     2.9     68        0    7.4
Rio2     Rio     4.2     24        0    7.2
Rio3     Rio     0.0     15        0    4.9
Rio4     Rio     9.3     54        0    7.5