Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 30
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

10 CpGs in target; 3 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    85.7     35        0    6.6
Qui1     Qui    60.0     30        0    6.8
Qui2     Qui    44.7     38        0    5.7
Qui3     Qui    52.6     19        0    6.0
Qui4     Qui    50.0      6        0    3.0
Rio1     Rio    71.4     28        0    5.7
Rio2     Rio    75.8     33        0    7.2
Rio3     Rio    50.0     14        0    3.9
Rio4     Rio    73.8     42        0    6.6