Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 29
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

29 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    88.4    242        0    9.4
Qui1     Qui    56.2    144        0    5.2
Qui2     Qui     3.0    132        0    5.2
Qui3     Qui     0.7    145        0    4.9
Qui4     Qui     0.0    126        0    4.6
Rio1     Rio    88.2    187        0    7.3
Rio2     Rio    90.1    181        0    6.5
Rio3     Rio    87.2    141        0    5.2
Rio4     Rio    92.2    230        0    8.5