Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 2
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     17        0   18.0
Qui1     Qui     0.0      8        0    8.5
Qui2     Qui     0.0     17        0   17.0
Qui3     Qui     0.0     44        0   43.5
Qui4     Qui     0.0      6        0    6.0
Rio1     Rio    35.7     14        0   14.0
Rio2     Rio     0.0     13        0   13.0
Rio3     Rio    27.3     11        0   11.5
Rio4     Rio    42.1     19        0   19.5