Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 35
  seen in >= 2 oysters: 6
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

19 CpGs in target; 18 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    95.8     72        0    7.0
Qui1     Qui    88.5     26        0    7.6
Qui2     Qui    88.9     45        0    8.4
Qui3     Qui    87.6     97        0   10.7
Qui4     Qui    87.7     65        0    7.5
Rio1     Rio    91.4    105        0    9.5
Rio2     Rio    90.2     51        0    7.0
Rio3     Rio    91.5     71        0    7.3
Rio4     Rio    92.6     94        0    8.5