Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 4
  seen in >= 2 oysters: 4
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 4  [CpG-destroying: 3]
    845952 A>G  Pum=0.455  Qui=0.0  Rio=0.615
    845992 G>A  Pum=  Qui=0.0  Rio=0.526
    846003 C>T  Pum=0.5  Qui=0.0  Rio=0.667
    846005 G>A  Pum=0.25  Qui=0.0  Rio=0.526

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    75.0      4        0    8.5
Qui1     Qui   100.0      4        0   10.0
Qui2     Qui   100.0      6        0   10.5
Qui3     Qui   100.0      6        0   12.5
Qui4     Qui   100.0      5        0   12.5
Rio1     Rio    16.7      6        0    9.5
Rio2     Rio   100.0      3        0    5.0
Rio3     Rio    60.0      5        0    8.0
Rio4     Rio    60.0      5        0    8.0