Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 12
  seen in >= 2 oysters: 4
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    33.3      9        0   16.0
Qui1     Qui   100.0      3        0    6.0
Qui2     Qui   100.0      4        0    9.0
Qui3     Qui   100.0      3        0    7.5
Qui4     Qui              0        0    5.0
Rio1     Rio    50.0      6        0   11.0
Rio2     Rio    30.0     10        0   19.0
Rio3     Rio   100.0      3        0    4.0
Rio4     Rio    20.0     10        0   14.0