Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 68
  seen in >= 2 oysters: 9
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    783923 C>T  Pum=  Qui=1.0  Rio=0.32

22 CpGs in target; 15 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    51.5    163        0    8.8
Qui1     Qui    92.9     84        1    6.8
Qui2     Qui    90.3     31        1    5.5
Qui3     Qui    96.6     59        1    4.7
Qui4     Qui    92.6     68        1    6.8
Rio1     Rio    64.5    110        1    9.7
Rio2     Rio    51.5    101        1    8.7
Rio3     Rio    92.7     55        1    4.3
Rio4     Rio    53.7    108        0   10.8