Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 5
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    779345 C>T  Pum=0.125  Qui=1.0  Rio=0.32

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    54.5     11        0   19.0
Qui1     Qui     0.0      7        0    9.0
Qui2     Qui     0.0      2        1    6.0
Qui3     Qui     0.0      2        0    4.0
Qui4     Qui     0.0      3        1    8.0
Rio1     Rio    25.0      4        0   14.0
Rio2     Rio    42.9      7        1   15.0
Rio3     Rio     0.0      1        0    3.0
Rio4     Rio    40.0     10        1   15.0