Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 6
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    774353 A>G  Pum=0.714  Qui=0.0  Rio=0.564

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    37.5      8        0   12.5
Qui1     Qui   100.0      5        0    7.5
Qui2     Qui   100.0     12        0   16.0
Qui3     Qui   100.0      6        0    9.0
Qui4     Qui   100.0      5        0    6.0
Rio1     Rio    54.5     11        0   12.0
Rio2     Rio    55.6      9        0    9.5
Rio3     Rio    75.0      4        0    7.0
Rio4     Rio    60.0     10        0   14.0