Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 46
  seen in >= 2 oysters: 17
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    774353 A>G  Pum=0.714  Qui=0.0  Rio=0.564

30 CpGs in target; 15 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    45.6    261        1   12.3
Qui1     Qui    96.4    140        0    8.4
Qui2     Qui    97.2    218        0    9.1
Qui3     Qui    98.4    184        0    9.4
Qui4     Qui    96.8    185        0    8.1
Rio1     Rio    62.0    287        0   12.4
Rio2     Rio    53.1    258        0   12.9
Rio3     Rio    93.8    130        0    6.4
Rio4     Rio    78.7    258        1   13.2