Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 51
  seen in >= 2 oysters: 9
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 1]
    772437 C>A  Pum=  Qui=0.0  Rio=0.5
    772753 G>A  Pum=0.5  Qui=0.0  Rio=0.586

21 CpGs in target; 18 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    67.1    161        2   11.2
Qui1     Qui    99.0    103        0    9.8
Qui2     Qui    97.1    103        0    6.3
Qui3     Qui    96.7    121        0   10.0
Qui4     Qui    98.4     61        0    6.3
Rio1     Rio    60.2    113        1   10.6
Rio2     Rio    53.0    164        1   11.7
Rio3     Rio    98.6     72        0    5.5
Rio4     Rio    60.7    117        0   10.7